Would need many new mechanics... Thats difficult, just for a new super... Maybe if ships get able to walk in (if yu know what i mean) where you GO to your vault and move around. Then. This kind of super would be nice cause the ship gets a main/important thing in destiny

How about throw a waypoint down and call for backup and the ship flies in a drops a cluster bomb automatically where you throw your waypoint. Upgrades include different effects on enemies or teammates or yourself.