I have read several older posts about this but it seems to have mostly been forgotten and has still not been fixed. I know this hasn't affected everyone because I have witnessed people pick it up recently and obtain the grimoire points for it. It seems to mostly be affecting players that picked it up very early on in the game's release (first few weeks to a month in). I am 100% positive I picked up this dead ghost on my first play through during one of the early missions yet I did not get the grimoire points for it, and it is not there if I try to go back and collect it again. This is very frustrating because it is the only dead ghost I lack grimoire points for. This is Ghost Fragment: Darkness 3 (worth 10 grimoire) located on Earth in the Lunar Complex (the building between Skywatch and The Mothyards) in the dark room with 1 Knight, a bunch of Acolytes, and a sleeping Thrall. Please fix this Bungie because max grimoire is about all we guardians have left to shoot for after finishing all the content and collecting all the Raid and Exotic pieces. Please comment if you have had this problem to keep the post relevant or if you have a possible solution for a fix. By the way, this on PS4.
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I have had the same issue. I still show it uncolleceted but its bit there.