So I just beat Atheon on Hard mode and when I did it came up saying I had gotten the Vex Mythoclast, The Aspect of Glass ship and 3 ascendent shards and Energies.
When I exited to orbit and checked my character I didn't have the Vex but my Primary weapon slot keeps flashing like I have a new Item. I checked down to the tower to see if it had some how been sent to the postmaster but nothing was there. I'm really worried about this. Have I lost this completely? Will I never be able to recover it? If I have and can't could someone at least look into this bug. I'd hate any other player to lose out on loot like this.
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Have you completely disconnected from the servers? Load up a different game and then load Destiny back up, see if that works.