So I keep reading posts where peeps think that Cryptarchs aren't a legit way to get exotics. That they should be exclusive to raids, strikes, bounties and pvp tourneys. Why? What's wrong with the occasional rare drop after wiping out a squad of Fallen/Cabal/Hive/Vex? Speaking from a story point of view these guys have been raiding the Galaxy for centuries their Captains SHOULD have rare earth swag in there pockets just for kicks!
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This is one of the elements that comes from the ARPG influence. When smithing in certain games you get the opportunity to have it become a rarer version of whatever it was. Without crafting, this is the next best thing. I don't think it's a problem at all.