It's a straight up war. The EVE universe has entered a wormhole into the Halo Universe. The UNSC and Covenant join forces to defend their space against the merciless conquest of systems by the capsuleers. The flood gets pulled into the struggle as well. The forerunners also come to defend the Haloverse via space magic. Who wins? (The Jove Empire is not included.)
For those who have never seen/heard about/know anything about EVE Online, [url=https://www.youtube.com/watch?v=FZPCiqBLPM8]Here's a trailer that should help you understand it's universe[/url]
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I say halo cuz if Spartans or the flood destroy the cloning centers capsuleers went be dead but they would be flood controlled vegetables or in small pieces in space