I've never seen any legitimate plot holes mentioned before, just things in the movie that aren't fully explained.
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Like midday turning into midnight over the course of a minute or two?
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That's a movie mistake. A plot hole is a plot dynamic that contradicts the previously established canon of the movie, like Luke Skywalker suddenly forgetting how to use the force.
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In which case I guess it's full of plot inconsistencies instead of plot holes. There's also stuff like the Bat being magically untouched by all the mobs, Batman painting a giant gasoline bat on a bridge while he's got hours left, a fusion reactor becoming unstable, et cetera.
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I don't know if that really counts as a "plot hole" but I will admit that was a major flaw in the production of the film.