Sam has his default assault rifle and Raiden has his sword. There are two scenarios for the battle. The first one is that Sam has his default suit abilities and the second is he has them at maxed without safeties like he did with that final boss. The other battle for the hell of it would be Sam has a sword that acts just like Raidens. This battle also takes place with the two scenarios. So who wins?
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Raiden. You know, I'm gonna go with the guy who sort of threw a Metal Gear with his bare hands in the first few minutes of the game...