So I had basically finished the quest to get refined qualichor, had it sitting in my inventory. However, I was playing in the Quagmire when I decided to randomly help some blueberries kill the Lucent Executioners again and I opened their chest, which dropped more more regular Qualichor. It ended up overriding my Refined Qualichor, and now Fynch will constantly blink and no liner progress any Qualichor now. So I can’t try and open the chest in the Queen’s Bailey, which I need, I can progress the Qualichor anymore and my Refined Qualichor was basically taken away from me. I’m not sure if there is anything I can do about it now except sit here and hope for Bungie Help to acknowledge the issue.
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Check you didn't unlock the Triumph for the chest, After the 3 executioners die, a reveal spot appears and this leads you to the chest you use the Refined Qualichor on, you may have looted that chest