~~INTENDED GAME DESIGN~~
In the final Boss room, kills won’t count towards progress on a LOT of bounties, including:
• Dailies, Weeklies (ALL FACTIONS)
• Exotic Quest Kill Bounties
• Normal Quests Kill Bounties
Please put this on your radar, if possible.
Thank you
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This is actually intended. Boss room kills do not progress any kill-based bounties, to prevent easy farming of the masses of enemies. This has been in place since it was released.