Hey, just started the dead orbit exotic quest while wearing a shadder, emblem and the Spektar version of the heliopause clock, ran some strikes but the counter hadn't increased. Switched to the y1 cloak (because i dismantled the y2 heliopause cloak) and everything started counting as expected... i have a hunch that the other factions may be effected in a similar way. be warned.
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I had same problem but someone told me you have to use the cloak that the vendor is selling and when I did that it started counting