Extend the time you have to press X/Square in order to activate an ammo synthesis. OR, make separate cooldown times for each ammo type. The consumables inventory updates every so often and shuffles items about, far too many times have I used a synth of the wrong type and have had to wait 5 mins to use the correct one because of this.
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Uh, then select the correct ammo synth. It isn't rocket science.