I obtained an Agonarch Rune 2 days ago and have since killed 5 Hidden Taken Threats, but the Rune still says 1/7.
Also, when I'm in orbit there is a quest icon over the Tower but when I go there there is no quest to obtain, and I've never gotten the Taken War: Mars quest so I assume that this is the bugged quest.
What can I do to fix this, if anything? Help Bungie :'(
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I noticed the same thing also.