I had the exotic bounty for Bad Juju prior to the patch, and when I logged in after patch went live it was no longer in my inventory. My elder cipher bounty is still there, but not the other exotic one. I can only assume that this is a bug, and was not intended, as it can take quite a while for those exotic bounties to become available to you.
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should have been autocompleted. go to tower and find the individual tat the quest ends on and you will find your bad juju