We're gonna need a bigger Vault.....
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To address your headline: That is never going to happen. We are all humans here. To the Vault issue I say: We might not need a bigger vault. A different collection system for ships, shaders and emblems might do the job. according to one of the last updates they are working on something in general to fix the issue. I have seen and supported numerous calls for some kind of catalog-system that shows all the ships, emblems and shaders your characters have unlocked (in separate categories of course). Your character can pick any of these unlocked items either at a vendor (like Tess or Eva) or at any point in the game. Items still lock could be hidden or be grayed out and unaccessible (maybe with the option of previewing them). The vault would then only be needed for weapons and armor as well as materials.