I may be completely wrong on this, but what if the Queen has been taken and is actually the final boss in a harder mode of the raid. I am just going off the raid trailer where she says "You didn't think killing Oryx was the end, did you?" I know this could have just been made for trailer, but would be interesting if it was true.
Thoughts, affirmations, insults?
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In the opening cut scene the way she talks implies a history with Oryx, and there's the line 'the Awoken are my family now' which implies she'd had another family before.