The world changes, the mechanics don't. Unless we have a solid reason that they do.
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Yet we don't. ^_^[spoiler]Not even a theorized one.[/spoiler]
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What exactly is your point?
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Atheists seek a natural cause for an obviously tangible case, but they're still stumped on origins, and when they come up with a theory bordering sci-fy, it isn't observable.
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You assume many things. Reason can be applied beyond the natural world. It can deal with metaphysics just the same, though it's pure reasoning, rather than evidence based reasoning. The rules do not change until we have reason to believe they do.